`PosteriorDBTargets` － Targets collection

Setup instructions

To setup PosteriorDBTargets:

julia

using InferenceTargets, Pkg

package_spec = InferenceTargets.registry[:PosteriorDBTargets]
Pkg.add(package_spec)
using PosteriorDBTargets

   Resolving package versions...
  No Changes to `~/work/InferenceTargets/InferenceTargets/docs/Project.toml`
  No Changes to `~/work/InferenceTargets/InferenceTargets/docs/Manifest.toml`

Repository information

julia

package_spec

PackageSpec(
  url = https://github.com/Julia-Tempering/PosteriorDBTargets
  rev = 4823a1c9b55263ee9464dcda5357a51b308e62f8
  version = *
)

Usage

To access the list of targetIds available in PosteriorDBTargets:

julia

ids = find_targetIds(PosteriorDBTargets)
length(ids)

To load one target:

julia

some_id = ids[1]
load_target(PosteriorDBTargets, some_id)

StanLogPotential(GLMM_Poisson_model_model)

Summary

julia

using Markdown, PrettyTables
success, errored = InferenceTargets.summary_table(PosteriorDBTargets)

┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/GLMM_Poisson_model_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/covid19imperial_v2_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/covid19imperial_v3_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/nes_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/nes_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/nes_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/nes_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/nes_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/nes_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/nes_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/ldaK5_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/logistic_regression_rhs_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_county_intercept_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_hierarchical_intercept_centered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_hierarchical_intercept_noncentered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_partially_pooled_centered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_partially_pooled_noncentered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_pooled_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_variable_intercept_centered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_variable_intercept_noncentered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_variable_intercept_slope_centered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_variable_intercept_slope_noncentered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_variable_slope_centered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/radon_variable_slope_noncentered_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/blr_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/ldaK2_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/ldaK2_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60
┌ Warning: Loading a shared object '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/ldaK2_model.so' which is already loaded.
│ If the file has changed since the last time it was loaded, this load may not update the library!
└ @ BridgeStan ~/.julia/packages/BridgeStan/Qc2Lj/src/model.jl:60

Successfully loaded targets

julia

pretty_table(HTML, success; backend = Val(:html), show_subheader=false)

targetId	type
GLMM_Poisson_data-GLMM_Poisson_model	StanLogPotential{...}
GLMM_data-GLMM1_model	StanLogPotential{...}
GLM_Binomial_data-GLM_Binomial_model	StanLogPotential{...}
GLM_Poisson_Data-GLM_Poisson_model	StanLogPotential{...}
M0_data-M0_model	StanLogPotential{...}
Mb_data-Mb_model	StanLogPotential{...}
Mh_data-Mh_model	StanLogPotential{...}
Mt_data-Mt_model	StanLogPotential{...}
Mtbh_data-Mtbh_model	StanLogPotential{...}
Mth_data-Mth_model	StanLogPotential{...}
Rate_1_data-Rate_1_model	StanLogPotential{...}
Rate_2_data-Rate_2_model	StanLogPotential{...}
Rate_3_data-Rate_3_model	StanLogPotential{...}
Rate_4_data-Rate_4_model	StanLogPotential{...}
Rate_5_data-Rate_5_model	StanLogPotential{...}
Survey_data-Survey_model	StanLogPotential{...}
arK-arK	StanLogPotential{...}
arma-arma11	StanLogPotential{...}
bball_drive_event_0-hmm_drive_0	StanLogPotential{...}
bball_drive_event_1-hmm_drive_1	StanLogPotential{...}
bones_data-bones_model	StanLogPotential{...}
butterfly-multi_occupancy	StanLogPotential{...}
diamonds-diamonds	StanLogPotential{...}
dogs-dogs	StanLogPotential{...}
dogs-dogs_hierarchical	StanLogPotential{...}
dogs-dogs_log	StanLogPotential{...}
dogs-dogs_nonhierarchical	StanLogPotential{...}
dugongs_data-dugongs_model	StanLogPotential{...}
earnings-earn_height	StanLogPotential{...}
earnings-log10earn_height	StanLogPotential{...}
earnings-logearn_height	StanLogPotential{...}
earnings-logearn_height_male	StanLogPotential{...}
earnings-logearn_interaction	StanLogPotential{...}
earnings-logearn_interaction_z	StanLogPotential{...}
earnings-logearn_logheight_male	StanLogPotential{...}
ecdc0401-covid19imperial_v2	StanLogPotential{...}
ecdc0401-covid19imperial_v3	StanLogPotential{...}
ecdc0501-covid19imperial_v2	StanLogPotential{...}
ecdc0501-covid19imperial_v3	StanLogPotential{...}
eight_schools-eight_schools_centered	StanLogPotential{...}
eight_schools-eight_schools_noncentered	StanLogPotential{...}
election88-election88_full	StanLogPotential{...}
fims_Aus_Jpn_irt-2pl_latent_reg_irt	StanLogPotential{...}
garch-garch11	StanLogPotential{...}
gp_pois_regr-gp_pois_regr	StanLogPotential{...}
gp_pois_regr-gp_regr	StanLogPotential{...}
hmm_example-hmm_example	StanLogPotential{...}
hmm_gaussian_simulated-hmm_gaussian	StanLogPotential{...}
hudson_lynx_hare-lotka_volterra	StanLogPotential{...}
iohmm_reg_simulated-iohmm_reg	StanLogPotential{...}
irt_2pl-irt_2pl	StanLogPotential{...}
kidiq-kidscore_interaction	StanLogPotential{...}
kidiq-kidscore_momhs	StanLogPotential{...}
kidiq-kidscore_momhsiq	StanLogPotential{...}
kidiq-kidscore_momiq	StanLogPotential{...}
kidiq_with_mom_work-kidscore_interaction_c	StanLogPotential{...}
kidiq_with_mom_work-kidscore_interaction_c2	StanLogPotential{...}
kidiq_with_mom_work-kidscore_interaction_z	StanLogPotential{...}
kidiq_with_mom_work-kidscore_mom_work	StanLogPotential{...}
kilpisjarvi_mod-kilpisjarvi	StanLogPotential{...}
loss_curves-losscurve_sislob	StanLogPotential{...}
low_dim_gauss_mix-low_dim_gauss_mix	StanLogPotential{...}
low_dim_gauss_mix_collapse-low_dim_gauss_mix_collapse	StanLogPotential{...}
lsat_data-lsat_model	StanLogPotential{...}
mcycle_gp-accel_gp	StanLogPotential{...}
mcycle_splines-accel_splines	StanLogPotential{...}
mesquite-logmesquite	StanLogPotential{...}
mesquite-logmesquite_logva	StanLogPotential{...}
mesquite-logmesquite_logvas	StanLogPotential{...}
mesquite-logmesquite_logvash	StanLogPotential{...}
mesquite-logmesquite_logvolume	StanLogPotential{...}
mesquite-mesquite	StanLogPotential{...}
mnist-nn_rbm1bJ100	StanLogPotential{...}
mnist_100-nn_rbm1bJ10	StanLogPotential{...}
nes1972-nes	StanLogPotential{...}
nes1976-nes	StanLogPotential{...}
nes1980-nes	StanLogPotential{...}
nes1984-nes	StanLogPotential{...}
nes1988-nes	StanLogPotential{...}
nes1992-nes	StanLogPotential{...}
nes1996-nes	StanLogPotential{...}
nes2000-nes	StanLogPotential{...}
nes_logit_data-nes_logit_model	StanLogPotential{...}
normal_2-normal_mixture	StanLogPotential{...}
normal_5-normal_mixture_k	StanLogPotential{...}
one_comp_mm_elim_abs-one_comp_mm_elim_abs	StanLogPotential{...}
ovarian-logistic_regression_rhs	StanLogPotential{...}
pilots-pilots	StanLogPotential{...}
prideprejudice_chapter-ldaK5	StanLogPotential{...}
prideprejudice_paragraph-ldaK5	StanLogPotential{...}
prostate-logistic_regression_rhs	StanLogPotential{...}
radon_all-radon_county_intercept	StanLogPotential{...}
radon_all-radon_hierarchical_intercept_centered	StanLogPotential{...}
radon_all-radon_hierarchical_intercept_noncentered	StanLogPotential{...}
radon_all-radon_partially_pooled_centered	StanLogPotential{...}
radon_all-radon_partially_pooled_noncentered	StanLogPotential{...}
radon_all-radon_pooled	StanLogPotential{...}
radon_all-radon_variable_intercept_centered	StanLogPotential{...}
radon_all-radon_variable_intercept_noncentered	StanLogPotential{...}
radon_all-radon_variable_intercept_slope_centered	StanLogPotential{...}
radon_all-radon_variable_intercept_slope_noncentered	StanLogPotential{...}
radon_all-radon_variable_slope_centered	StanLogPotential{...}
radon_all-radon_variable_slope_noncentered	StanLogPotential{...}
radon_mn-radon_county_intercept	StanLogPotential{...}
radon_mn-radon_hierarchical_intercept_centered	StanLogPotential{...}
radon_mn-radon_hierarchical_intercept_noncentered	StanLogPotential{...}
radon_mn-radon_partially_pooled_centered	StanLogPotential{...}
radon_mn-radon_partially_pooled_noncentered	StanLogPotential{...}
radon_mn-radon_pooled	StanLogPotential{...}
radon_mn-radon_variable_intercept_centered	StanLogPotential{...}
radon_mn-radon_variable_intercept_noncentered	StanLogPotential{...}
radon_mn-radon_variable_intercept_slope_centered	StanLogPotential{...}
radon_mn-radon_variable_intercept_slope_noncentered	StanLogPotential{...}
radon_mn-radon_variable_slope_centered	StanLogPotential{...}
radon_mn-radon_variable_slope_noncentered	StanLogPotential{...}
radon_mod-radon_county	StanLogPotential{...}
rats_data-rats_model	StanLogPotential{...}
rstan_downloads-prophet	StanLogPotential{...}
sat-hier_2pl	StanLogPotential{...}
sblrc-blr	StanLogPotential{...}
sblri-blr	StanLogPotential{...}
science_irt-grsm_latent_reg_irt	StanLogPotential{...}
seeds_data-seeds_centered_model	StanLogPotential{...}
seeds_data-seeds_model	StanLogPotential{...}
seeds_data-seeds_stanified_model	StanLogPotential{...}
sesame_data-sesame_one_pred_a	StanLogPotential{...}
soil_carbon-soil_incubation	StanLogPotential{...}
state_wide_presidential_votes-hierarchical_gp	StanLogPotential{...}
surgical_data-surgical_model	StanLogPotential{...}
synthetic_grid_RBF_kernels-kronecker_gp	StanLogPotential{...}
three_docs1200-ldaK2	StanLogPotential{...}
three_men1-ldaK2	StanLogPotential{...}
three_men2-ldaK2	StanLogPotential{...}
three_men3-ldaK2	StanLogPotential{...}
timssAusTwn_irt-gpcm_latent_reg_irt	StanLogPotential{...}
traffic_accident_nyc-bym2_offset_only	StanLogPotential{...}
uk_drivers-state_space_stochastic_level_stochastic_seasonal	StanLogPotential{...}
wells_data-wells_daae_c_model	StanLogPotential{...}
wells_data-wells_dae_c_model	StanLogPotential{...}
wells_data-wells_dae_inter_model	StanLogPotential{...}
wells_data-wells_dae_model	StanLogPotential{...}
wells_data-wells_dist	StanLogPotential{...}
wells_data-wells_dist100_model	StanLogPotential{...}
wells_data-wells_dist100ars_model	StanLogPotential{...}
wells_data-wells_interaction_c_model	StanLogPotential{...}
wells_data-wells_interaction_model	StanLogPotential{...}

Errored targets

julia

pretty_table(HTML, errored; backend = Val(:html), show_subheader=false)

targetId	error
sir-sir	ErrorException("log_density_gradient() failed with exception: Exception: sir_model_namespace::log_prob: y[6][4] is -1.82492e-07, but must be greater than or equal to 0.000000 (in '/home/runner/.pigeons/posteriordb/posterior_database/models/stan/sir.stan', line 43, column 2 to column 32)\n")

PosteriorDBTargets － Targets collection ​

Setup instructions ​

Repository information ​

Usage ​

Summary ​

Successfully loaded targets ​

Errored targets ​

`PosteriorDBTargets` － Targets collection

Setup instructions

Repository information

Usage

Summary

Successfully loaded targets

Errored targets